Khiem Le

How to see ROUGE socre in validate mode

1

I use validate mode to get my model performance, but I didn't see ROUGE scores, I just saw : [2021-02-19 07:28:44,643 INFO] * number of parameters: 180222522 [2021-02-19 07:41:53,946 INFO]...

About mol_to_graph_data_obj_simple functions

2

Thank you for an interesting repo. I went through the code and I noticed that you used two different mol_to_graph_data_obj_simple functions for contrastive pre-training and property prediction fine-tuning. pre-training: https://github.com/chao1224/MoleculeSTM/blob/main/MoleculeSTM/datasets/utils.py#L44...

Prediction meanings

1

Thanks for an amazing repo I recently checked the `Prediction/ProtBert-BFD-Predict-SS3.ipynb` and I am not sure about the meaning of the predictions of the model `Rostlab/prot_bert_bfd_ss3` For example: `{'entity': 'C', 'index':...