blast like alignment

[ruolin]

>7001174F:HCY5TBCX3200721:HCY5TBCX3:1:2202:11382:19258  0       19      39964932        51      7S8M1I77M       *       0       0       CCCAGCCCCCAGCCCACAGCCCNCAGAGCTACCACCAGGTGGCGCCAAGCCCAGCAGGCTACCAGAATACCCACTCCCCAGCCAGCTACCACC   IIIIIIHIIHIIGIIIIIIIIIFIIIIIIHHHCDIIIIIIIIIIIIIIIIIIHIIIIIIIIIIIIIHHHIIIIIIIIIIHHIIIGIIIIIIII       NM:i:2  ms:i:153        AS:i:153        nn:i:1  tp:A:P  cm:i:8  s1:i:55 s2:i:0  de:f:0.0233     rl:i:0
Ref+:          1 CCCAGCCC-CAGCCCcCAGAGCTACCACCAGGTGGCGCCAAGCCCAGCAGGCTACCAGAATACCCACTCCCCAGCCAGCT 79
                 |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Qry51:   39964932 CCCAGCCCaCAGCCCnCAGAGCTACCACCAGGTGGCGCCAAGCCCAGCAGGCTACCAGAATACCCACTCCCCAGCCAGCT 39964853

Ref+:         80 ACCACC 85
                 ||||||
Qry51:   39964852 ACCACC 39964847

It is misaligned. | paftools.js view -