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Report self-alignment of read only (opposite to -X)?

Open ishengtsai opened this issue 2 years ago • 0 comments

Hi,

I was wondering if an option can be implemented for minimap2 to report read mappings of themselves please? We can parse from the final paf output but it will be much faster if we only want alignment of read to itself.

Many thanks.

ishengtsai avatar Feb 08 '23 02:02 ishengtsai