fermikit
fermikit copied to clipboard
Error in make
When I run the command make -f prefix.mak, I get the error fermi.kit/bfc -1s 3g -k 61 -t 16 prefix.ec.fq.gz 2> prefix.flt.fq.gz.log | gzip -1 > prefix.flt.fq.gz /bin/bash: line 1: 13973 Segmentation fault fermi.kit/bfc -1s 3g -k 61 -t 16 prefix.ec.fq.gz 2> prefix.flt.fq.gz.log 13974 Done | gzip -1 > prefix.flt.fq.gz make: *** [prefix.flt.fq.gz] Error 139 How can I solve this?
perhaps this is too late to help you... try running with make -d option to get the full verbose details. also did you get a segmentation fault and did you compile from the source or install from a binary - i wd recommend the former.
I am getting a Error 137 - which is out of memory during the error correction, bfc run. any tips from to optimize wd be appreciated...