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the minimum mapped length

Open zhouyunyan opened this issue 6 years ago • 0 comments

Hi, I used bwa-mem with default options, but not very clearly how many bases mapped to reference sequence are considered mapped in bwa-mem. is there a minimum mapped length in bwa-mem? I read the bwa-mem manual but haven't found that, there is a matching score to measure the mapping quality.

zhouyunyan avatar Sep 04 '19 01:09 zhouyunyan