Laurent Gatto

> So, you're moving the `MsFeatureData` to `MSnbase`, right? From the above, I rather meant `FeatureMSnExp` (a renamed virutal `XCMSnExp`) and `MsFeatureData`, and we can implement our respective `XCMSnExp` (with...

I am going to wait before doing this, that I have the new interface with `QuantitationParam` in place.

It's the standard location for package caching: ```r > tools::R_user_dir(package = "rpx", which = "cache") [1] "/home/lgatto/.cache/R/rpx" ``` `rpx` (and its cached) is used to download files from the PRIDE...

I had a quick look and the error complains about an empty filenames vector, that should have been created in the previous (unnamed) chunk: ```r fls

Hi @nturaga - the error in the build report is due to an URL that seemed temporarily inaccessible (it works now). The [first code chunk](https://github.com/rformassspectrometry/MsExperiment/blob/main/vignettes/MsExperiment.Rmd#L78-L82) (other than loading packages) pulls...

Weird, I [pushed](https://github.com/rformassspectrometry/MsExperiment/commit/9e5f85252c102b0188d67ce9440274907e8bbbae) a version bump (plus code chunk labels) but it didn't triggered the spb. Any idea @nturaga?

Indeed, thank you @lshep, and sorry for missing the obvious reason.

Hi @hpages Thank you for your insightful comments and suggestions. Here's how we have addressed them: 1. Imports: - Importing selectively from the **methods** package is strongly discouraged. Note that...

@mooredf22 - just checking weather you have pushed your latest changes to the Bioconductor git server, as the last commit I see is ``` Author: Moore Date: Wed Mar 2...

@mooredf22 do you need any help to push your latest changes to the Bioconductor git server?