Laurent Gatto

icon indicating a website link https://lgatto.github.io/

icon company de Duve Institute, UCLouvain icon location Belgium icon location Open science, reproducible research, bioinformatics, computational biology, proteomics, more omics, emacs, a lot of R, running and parenting.

Results 260 comments of Laurent Gatto

internal fragmentation

@pavel-shliaha @sgibb any news on this front?

internal fragmentation

Ok, thanks.

internal fragmentation

Any news on this front?

internal fragmentation

What's the status of this?

Faster quantify functions

For completeness, here's some testing/devel code I wrote that made it into `MSnbase` as the `fastquant_max` and `quantify_OnDiskMSnExp_max` functions (ad42601e05672545e1cb6042e98e55781c34deee and 55d3fac1726e4f200aca82b560289a10cc3dcdea). ``` r ## quantifies peak pk in regions...

Faster quantify functions

Thanks @sgibb. The function currently is used for iTRAQ/TMT quantitation indeed, but I would like it to be more general, or have one available for any peak (MS1 or MS2,...

Segmentation fault on install

No, and unlikely to be able to help without any details. Closing, but feel free to re-open if you can provide additional information.

Segmentation fault on install

1. command you ran to try to install the package 2. output of `sessionInfo()` 3. detailed error message

Segmentation fault on install

Ok, so you are using a recent R, with what I assume is Bioconductor release, i.e version 3.12. This is something you can verify with `BiocManager::version()`. I can't see anything...

Segmentation fault on install

Could you try to load `mzR` with `library(mzR)` - does that work?