Luigi Faino

Hi, very nice work but i have a question. I have a PC with 3 GPU, how can i use all of them? Can i set to which card send...

Hi, I made some test my self. Considering that on gtx1070 I can lunch 7 process at the time, I was able to make a variant call in 22 minutes...

@hasindu2008 here the command for CPU: `time python3 /data/software/nanopolish/scripts/nanopolish_makerange.py reads.paf.b02.racon1.fasta | parallel --results nanopolish.results -P 20 nanopolish variants --consensus -o cpu/polished.{1}.vcf -w {1} -r barcode02_guppy.fastq -b test.sorted.bam -g reads.paf.b02.racon1.fasta -t...

@vellamike, my idea was a bit different but i can try to make a work around. i would like to use parallel with makerange.py and send to one GPU or...

Hi, did you install via docker or singularity? Cheers Luigi

Working on it. I will write ASAP i will find the problem

Dear @cgjosephlee and @ncgrjsmiao , i did build a new image with some change. It looks that i fix the problems. you can try by running: `docker run -it --rm...

We need to check if mysql started. you can test this by running: `docker run -it --rm -v $PWD:/data lfaino/lorean:noiIPRS bash` once the image start, you can run: `mysql -u...

do you have installed mysql on your system?

Hi @cgjosephlee , can you test again. I removed mysql and now it works with my data. please let me know. Cheers Luigi