Lev Levitsky

"colourify env" is disruptive in case `env` is used to run a command

2

`grc` [colorizes](https://github.com/garabik/grc/blob/master/grc.sh#L12) the output of `env`. This works fine when `env` is used to print out the environment variables, but its primary objective is different: to run an external command...

Problem compiling against rpc on Arch

8

Hello, I know Arch is not a supported platform, but I hope you would be able to help me with this. Percolator needs some `tirpc` headers such as `netconfig.h` and...

Get a less rounded mz_delta value in ppm for annotations?

5

Hi, thank you once again for this package. I am currently using it for some bulk annotations and, due to the rounding of ppm values to 1 decimal digit, I...

Should we use psims.obo to better control param value types in PSI formats?

1

I came across a corner case when parsing an MzIdentML file which has `spectrum title` filled in with bare scan numbers (integers): ```xml ``` The expected value type for this...

Update annotation of PXD020394

3

### **PR Type** Other ___ ### **Description** - Updates annotation for dataset PXD020394 - The PR appears to be focused on correcting or improving metadata/annotations for a specific proteomics dataset...

Peptidoforms parsed from MaxQuant output are not always valid

4

Hi! I am trying to parse a few different MaxQuant output files and the modified sequences extracted from the file are not parsed as ProForma correctly. Here is what I...

deb package install conflict with sqlite3

2

### Operating System and Hardware Ubuntu 24.04.3 LTS ### OpenMS Version 3.5.0 ### Installation Method Linux Package ### Bug Description Hi! I am downloading and installing the deb package attached...