Leor Ariel Rose

@NHPatterson Just adding a few more details. This is how it looks when opening the images after registration in Napari:  I've also uploaded the sample data I used to...

This issue is solved if I add downsampling to modality_1 when calling add_modality: ``` reg_graph.add_modality( "modality_1", "./sample_data/mod_1/img.ome.tiff", image_res=0.221, preprocessing={"image_type": "BF", 'downsampling': 2}, output_res=1.0 ) ```  But if I add...

same issue

When i use (AutomaticTransformInitializationMethod "GeometricalCenter") the masks are taken into consideration but when using (AutomaticTransformInitializationMethod "CenterOfGravity") mask are not taken into consideration and transform parameters are initialized the same as...

Looks like changing the `schema_version` in the `napari.yaml` to `0.1.0` from `0.2.0` fix the issue..

@ntatsisk of course, here is the information requested: - OS - windows 10 - Python version - 3.9.16 - Installation - `pip install elastix-napari` I should also note that i'm...