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PepTools - An Immunoinformatics (Immunological Bioinformatics) R-package for working with peptide data

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I noticed in BLOSUM62_PROB.Rdata, M to L substitution has higher score than M to M. This is also true in the BLOSUM62 matrix from http://www.cs.cornell.edu/courses/cs626/2003sp/blosum62qij.txt. For example, I was not...

Is there a function to deal with DNA sequence like `pep_encode`?