James

Hi, I also encountered same issue when using downloaded eggnog-mapper in CMD of Windows: C:\Python38\Lib\site-packages\eggnog-mapper-2.1.9>python emapper.py -i test.fasta -o out Unrecognized tax ID, tax name or tax_scope mode: 'all'. My...

@Cantalapiedra Hi Carlos. Thanks for you advice. I will take a look at the turorials you send, and figure out installing python and eggnog-mapper in the Ubuntu. It might be...

Dear @Cantalapiedra , Thanks for your help, I have one question about the Linux OS I installed: I updated the WSL2 and installed the Ubuntu by using the .appx file...

Hi @Cantalapiedra , I pretty much setup everything but stuck at the first test run again. I installed Miniconda3 and setup my environment named as "rna" , and upgraded my...

I will try running it again with smaller test file next week since I am out of office. I will let you know the result.

Hi @Cantalapiedra , I used fasta file with 1 protein sequence and successfully got my result. ``` (rna) leo913@DESKTOP-56F5NN6:~/eggnog-mapper-workplace$ emapper.py -i test.fasta -o result1 # emapper-2.1.10 # emapper.py -i test.fasta...

Hi @Cantalapiedra , Thanks for the tips! The 100 proteins tests run was interupted due to the Windows update in midnight I guess. However, I used my 200k-proteins fasta file...

@Ruibin-Liu Thank you. I will try re-downloading the CIF files again. But it is very unstable to download this part and i believe the files might be damaged during the...