Lei

This is the parameter that I used for dimension reduction: `st.dimension_reduction(adata, n_neighbors=100,n_components=3,n_jobs=40, method='mlle')` I initially used default `method='se'` and I figured out that it is not compatible with mapping function,...

I really like your stream gene plot, I wonder if it is possible to display the gene expression with only selected cells. For example, if I built trajectory using both...

I have found out how to plot the gene expression with selected conditions: `adata_df_wt = adata[adata.obs.label == 'WT' ].copy() ` `st.stream_plot(adata_df_wt, root='S3',factor_min_win=1.0,factor_num_win=10,flag_log_view=True,factor_width=2,fig_legend_ncol=5,fig_size=(8,8), fig_name='stream_plot_wt.pdf',save_fig=True, fig_path=out_path)`

Hi, I ran into the same problem... I would like to know whether this issue has been fixed. Thanks! Lei