Leander van Eekelen

icon company @computationalpathologygroup @DIAGNijmegen icon location The Netherlands icon location PhD candidate working on improving immunotherapy response prediction using deep learning at @DIAGNijmegen & @computationalpathologygroup

Results 5 issues of Leander van Eekelen

Allow changeable colors for PointSet objects

PointSet objects in ASAP are great because they seem to have much higher graphical performance than their counterpart (Points). This allows you to present point annotation in large ROIs (perhaps...

enhancement

Change default folder to open in 'Load' dialogue boxes

Currently, whenever you open a loading dialogue box, e.g. when you open a mask in the 'Overlays' tab or an XML annotation file in the 'Annotations' tab, the default folder...

enhancement

Implement on/off display toggle for annotations

It would be convenient to have a on/off toggle for the display of annotations; sometimes a point annotation obscures part of the cell you want to view. In those instances,...

enhancement

Small typo fix

We claim that the function name for saving data in numpy is `numpy.write`, while it is actually `numpy.save` (https://numpy.org/doc/stable/reference/generated/numpy.save.html).

Unpaired annotation

1 comment

I noticed that in folder `derivatives/labels/` there exists a group of segmentations `sub-brno0{1:9}` that don't have corresponding images in the main folder. Is this some legacy annotation of are the...