DongLi

I used the following code, do not know if this is correct? awk '$1 ~/S/ {print ">"$2"\n"$3}' reads.gfa > reads.fasta

Thank you very much for your reply. I want to ask one more question, how do I evaluate the effectiveness of our genome assembly? At present, I want to use...

Thank you very much for your reply. I want to ask one more question, how do I evaluate the effectiveness of our genome assembly? At present, I want to use...

Hello! I have extracted the repetitive sequences of the species I used in dfam through famdb. py, and the size in capital is about 800K. I can now combine the...

Thank you very much for your reply! I used addrepbase. PL to merge Repbase database with dfam database, found pig of my species through famdb. py, and then extracted repeated...

Thank you very much for your reply. Your reply is predictable. I did get bad results. So if I use the Lib of the RepBase database -species and get good...

Thank you for your patient and constructive reply. I will try different methods again to see the specific differences between different methods!

Hello! I found that this is mainly due to the mismatch between the data of my two chains. I am now trying a new one. Thank you for your help!

Dear jacomegutierrez: Did you test on the original data? Please remember that due to double-stranded sequencing, the quality control of the two strands needs to be performed at the same...

> 您好， 我正在使用 conda HiC-pro 3.1.0。我遇到了同样的错误。 我更喜欢使用 HiC-pro 而不是其他软件。 这个问题有解决办法吗？ 谢谢！ > > R1 和 R2 标签配对... 日志：logs/sample1/mergeSAM.log make：*** [/root/HiC-Pro/bin/../scripts//Makefile:144: bowtie_pairing] 错误 1 > > /HiC-Pro_3.1.0/scripts/mergeSAM.py -q 10 -t -v...