Lucas Czech

Hey @JennyCNS, any news on this? I am not sure what I can do to help with this - would it help to be more lenient with respect to the...

Hi @JennyCNS, just wanted to give a brief heads-up about the latest release [grenedalf v0.5.0](https://github.com/lczech/grenedalf/releases/tag/v0.5.0). It has several improvements that might be relevant for you. Also, I now wrote some...

Oh okay, if you can explain that discrepancy, I could maybe implement it in grenedalf in a way that works for your format as well? Or is it the point...

Hi @TylerAudet, very sorry for the very late answer here, somehow missed to reply to a few issues here completely. So, the way this currently works is that we stream...

Hi @TylerAudet, took me a while, but the latest release [grenedalf v0.5.0](https://github.com/lczech/grenedalf/releases/tag/v0.5.0) now has a completely redesigned approach for calculating the diversity statistics. We now offer `--window-average-policy` (see [here](https://github.com/lczech/grenedalf/wiki/Windowing#window-averaging-policy) and...

Hey Zhuqing, EDIT (2024-06-08): With the latest release of [grenedalf v0.5.0](https://github.com/lczech/grenedalf/releases/tag/v0.5.0), the below answer is outdated. Please refer to the up-to-date [wiki](https://github.com/lczech/grenedalf/wiki/Output) instead for details on how the on screen...

Hey @biozzq, big update on this! In the latest release [grenedalf v0.5.0](https://github.com/lczech/grenedalf/releases/tag/v0.5.0), I have completely re-design the filtering approach, and hence also the output of the filter statistics. Please use...

Hi Martin, > I have another suggestion Keep them coming! Happy to get new ideas, even though I cannot always promise delivery times :-) > One common problem with PoPoolation...

Follow up question for @capoony and @jeffspence: The mask file is easy enough to use for counting positions to be used for computing relative Theta, as the mask file format...

Hi @capoony, finally the (hopefully) proper ways of normalizing windows is now implemented in [grenedalf v0.5.0](https://github.com/lczech/grenedalf/releases/tag/v0.5.0), as you also saw from the email earlier today with @alanbergland. Just wanted to...