Lieke Michielsen

Results 6 comments of Lieke Michielsen

treeArches on Tabula Sapiens

**Issue 1: Flat tree when training on one dataset** When you only use the train_tree function, no hierarchy is learned indeed. This function only trains the tree (the classifiers) you...

Implement FAISS GPU support

Hi Nico, Thanks for your interest in the package! - Pandas v2: scHPL unfortunately doesn't work with pandas v2. The update step goes wrong in that case and the same...

Implement FAISS GPU support

Thanks! Very nice additions with the tqdm and to fix the underscore in the print function! I tested the code and the GPU works like a charm for me during...

Implement FAISS GPU support

Hmm difficult. I checked the FAISS documentation, but I am not sure either how to fix this efficiently for now. In the beginning it worked sort of automatically, don't know...

Implement FAISS GPU support

Hi Nico, for me it also works although I am not sure whether it really always using the GPU, but indeed it doesn't crash. So I decided to just approve...

ValueError: Re-registering the builtin cmap 'Set1' is not allowed.

I experienced the same error and guess it has something to do with the matplotlib version. As a workaround I cloned this GitHub repo and commented out this line 600...