lbundalian
lbundalian
Hello. It is still me, I just used the wrong account for posting but yes, that is my current problem. Given the spacings as mentioned still show the same problem.
Hello. God day! It produces the same error with groups: null
It is working now, there is one I misspelled. However, I am getting this now: [Sun May 14 15:12:35 2023] Error in rule mae_createSNVs: jobid: 52 input: /work/users/pz192nijo/Projects/Schubert.DROP3/Scripts/Pipeline/chr_NCBI_UCSC.txt, /work/users/pz192nijo/Projects/Schubert.DROP3/Scripts/Pipeline/chr_UCSC_NCBI.txt, /work/users/pz192nijo/Projects/Schubert.DROP3/vcf/31800SL_S26-gatk-haplotype.vcf.gz,...
Hello. I have checked but I think it is still the same error: Error in rule mae_createSNVs: jobid: 28 input: /work/users/pz192nijo/Projects/Schubert.DROP3/Scripts/Pipeline/chr_NCBI_UCSC.txt, /work/users/pz192nijo/Projects/Schubert.DROP3/Scripts/Pipeline/chr_UCSC_NCBI.txt, /work/users/pz192nijo/Projects/Schubert.DROP3/vcf/3021163-gatk-haplotype.vcf.gz, /work/users/pz192nijo/Projects/Schubert.DROP3/bam/SS_3032087_RAligned.sortedByCoord.out.bam, /work/users/pz192nijo/Projects/Schubert.DROP3/Scripts/MonoallelicExpression/pipeline/MAE/filterSNVs.sh, /work/users/pz192nijo/Projects/Schubert.DROP3/Output/processed_data/mae/params/snvs/3032087_snvParams.csv output: /work/users/pz192nijo/Projects/Schubert.DROP3/Output/processed_data/mae/snvs/3021163--3032087.vcf.gz, /work/users/pz192nijo/Projects/Schubert.DROP3/Output/processed_data/mae/snvs/3021163--3032087.vcf.gz.tbi shell:...
ok, I have seen another one but it didnt work, so I will give this one a try. Thank you
 Now the error is ike this upon updating the zip
None of them run. Now I am having problems related to this ERROR: No allele-specific counts Make sure that the chromosome styles of the FASTA reference and BAM file match....
This is my error now: 
Why would it be different if they have the same source of RNA_ID