Laura Žigutytė

icon indicating an email [email protected]

icon location Dresden, Germany icon location PhD Student @KatherLab, former member of @BiAPoL.

Results 6 issues of Laura Žigutytė

Re-enable tests on Windows

See PR #231 for the disabling reason.

on hold

Clustering is not reset when clicked anywhere in the plot if "hide non-selected" box is not checked

Expected behaviour: when clicked on anywhere in the plot, the plot should be reset to the one without any visualized clusters. https://user-images.githubusercontent.com/52177660/226913461-8b0e2dfd-5790-4402-8650-004a59004715.mp4

bug

Reactivate napari hub preview page

Reactivate _napari hub plugin preview_, which was deactivated in #147 due to failing tests. Reactivation can be done when the migration to npe2 is performed as explained in the referenced...

enhancement
on hold

Exchange Qt code file with a file from Qt Designer

6 comment

https://doc.qt.io/qt-6/qtdesigner-manual.html

enhancement

Implement a technique to explain non-linear dimensionality reduction results

Potentially a way to explain non-linear dimensionality reduction (e.g., UMAP) results could be implemented, e.g., using [ClusterShapley](https://github.com/wilsonjr/ClusterShapley), which is based on [SHAP](https://shap.readthedocs.io/en/latest/) - a game theoretic approach to explain the...

enhancement

Neighbourhood-based measurements are not computed

Hi @haesleinhuepf, I think this is a bug because returned measurements table does not contain any neighbourhood-based measurements. napari-pyclesperanto-assistant 0.21.0 If you point me to the right direction, I could...