rtracklayer
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lawremi
R interface to genome annotation files and the UCSC genome browser
`CURLINFO_FILETIME_T` was added to `curl` in v. `7.59.0`. Latest `curl` version available on Ubuntu 18.04 is `7.58.0`, hence `rtracklayer` install fails on Ubuntu 18.04. Some systems still rely on Ubuntu...
I am happy to see there is a demonstration of usage to get the RepeatMakser track in rtracklayer, since I am very interested in this field. I just found an...
Updating failed with a following error; ``` ld: library 'ssl' not found clang: error: linker command failed with exit code 1 (use -v to see invocation) make: *** [rtracklayer.so] Error...
Just wanted to give you a heads up, the devel version of `rtracklayer` is failing on Bioc: http://bioconductor.org/checkResults/devel/bioc-LATEST/rtracklayer/ Thanks!, Brian
The perfect gft/gff file is tricky to make at once by using rtracklayer. Attributes must end in a semi-colon, and be separated from any following attribute by exactly one space....
Hi Michael, @lawremi I hope you are well! This is just a gentle reminder to push fixes to `rtracklayer` devel (and release if necessary). The commit here (https://github.com/lawremi/rtracklayer/commit/86407bbef2d02455053b7b7c96afe9c5ce6949e7) could help...
Hello, I got an issue about Ucsc track, which is related to [#99 ](https://github.com/lawremi/rtracklayer/pull/99) When I learn the code `rTrack "Error in normArgTrack(track, trackids) : Unknown track: refSeqComposite" ** When...
Hi, I think restfulr::RestUri can only process http, and that explain this error: ``` rtracklayer::ucscGenomes() Error in names(df)
