Lasse Meyer

Hi @andrea-de-micheli, to create a single SCE object from your images/masks, it would be more efficient to use the **steinbock** framework for pre-processing (described here: https://bodenmillergroup.github.io/steinbock/latest/ and also here: https://www.nature.com/articles/s41596-023-00881-0)....

Hi, `steinbock` should work on non-IMC images as long as the file formats match. You could check: https://bodenmillergroup.github.io/steinbock/latest/cli/preprocessing/#external-images - And if you run into troubles there, potentially open an issue...