lassancejm comments

Repositories
Issues
Comments

Results 2 comments of


                                            lassancejm

[dammit.annotate:ERROR] TaskError - taskid:TransDecoder.Predict

Just encountered the same error. I think this is caused by a change in the Transdecoder options In more recent versions of Transdecoder, Transdecoder.Predict expects ```--retain_long_orfs_length``` instead of ```retain_long_orfs```. If...

Add random exponential backoff to with_retries: Toil goes rogue if with_retries fails, pipeline should exit

I am seeing a similar behavior on a cluster using Slurm and toil 3.18 (specific tool: Progressivecactus https://github.com/ComparativeGenomicsToolkit/cactus) `INFO:toil.leader:Reissued any over long jobs` appears in the log without jobs being...