Uri Laserson issues

Results 36 issues of


                                            Uri Laserson

us-east-1b is hardcoded into cloudformation.template

If the `provision` command takes an availability zone, it should probably interpolate it into the cloudformation template. Reported by @jerryivanhoe

dnload_raw operation requires the ability to `sudo -u hdfs`

The eggo cli tool to download a dataset on a CDH cluster uses Hadoop Streaming basically as a job scheduler to dnload files into HDFS. The CLI here: https://github.com/bigdatagenomics/eggo/blob/c0e980f6581e85d4687de625af2957906d446c22/eggo/cli/datasets.py#L33 And...

Extract Hive queries into separate reusable files

1000 Genomes Phase 3 VCF data set to be hosted in S3 in parquet format

dataset

Platinum Genomes data set

dataset

Reduce number of CM/CDH restarts during cluster config

Currently there are 2 restarts, where one will do. Should save some time.

ENCODE data set to be hosted in S3 in parquet format

dataset

Create doc with list of assumptions about cluster

What all does the eggo script do?

Investigate provisioning on Google's cloud

dbSNP VCF data set to be hosted in S3 in parquet format

dataset