Laramie McKenna Akozbek

@oushujun -- I'm sorry I didn't clarify this in the original post, but I've tried both versions available via singularity and the current version available via conda. The only thing...

@oushujun -- I have also used the most recent version. EDTA finishes without error in every case, even when it's estimating a total repeat content of 6% for a known...

@oushujun -- I just wanted to follow-up on this. Do you have any guesses as to what might be causing the behavior I described above?

@oushujun I was not sure what the expected output was for the test data, but I did run it on Arabidopsis TAIR10.1 using the _same_ parameters as I did for...

Below is the output of the test run if that helps! **Script (using same parameters)** ``` #!/bin/sh #SBATCH -e edta_singularity_%j.err #SBATCH -o edta_singularity_%j.out #SBATCH --job-name=edta_singularity #SBATCH --time-min=120:00:00 #SBATCH -c 100...

@oushujun -- do you mean that I should use the 2.1.0 version and use EDTA.pl through the current repository, which is 2.1.3?

Hi @sergpolly and @golobor , Thank you both for the quick response! I installed it based on the write-up you shared in your comment using `pip install --upgrade --force-reinstall git+https://github.com/open2c/MultiQC.git`...

Absolutely! Here's the output of `conda list` for the environment used during the successful run: ``` conda activate /cluster/home/lasmith/centromeres/neo/hap1/chromosomes/ChrY/StainedGlass/.snakemake/conda/4018f50b65bd0a625849ad987adee327_ conda list # Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge...