anipose

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image processing scripts

8

Addresses https://github.com/lambdaloop/anipose/issues/47. These aren't integrated into the anipose CLI yet but I thought I would ask before doing that so that it was done the right way. This PR was...

alexrockhill

Documentation improvements for filters

3

**Is your feature request related to a problem? Please describe.** I'd like to use filtering (2D as well as 3D with distance constraints) but the description of the filter parameters...

ljahn

Filtering tutorial/instructions suggestions

1

**Is your feature request related to a problem? Please describe.** A clear and concise description of what the problem is. Ex. I'm always frustrated when [...] 1. What is the...

lukehshaw

Consider using a conda config file for installation

1

Currently instructions indicate that deeplabcut should be installed as a pip dependency but don't go into how to get a CPU or GPU dlc version. DLC solved this by just...

jonnew

3D coordinates

6

I encounter problems with retrieving reliable 3D coordinates of markers which are visible in a different amount of cameras. For example: 6 markers (marker 1-6) are visible in the same...

MaudvdBogaart

anipose calibrate - error: input matrix must be 1x3, 3x1 or 3x3 in function cvRodigrues2

4

**Describe the bug** When trying 'anipose calibrate' on my movies I get the error message 'input matrix must be 1x3, 3x1 or 3x3 in function cvRodigrues2'. I use three calibration...

LWitter

Error in pose estimation from trained DLC Model

1

Encountered an error while running `anipose analyze` on a new config.toml with a working DeepLabCut config.yaml Had no trouble running deeplabcut.analyze_videos() in the same folder.

omeleavitt

calibration-errors results in "Import error cannot import name 'get_board_type'"

1

**Describe the bug** calibration-errors results in "Import error cannot import name 'get_board_type'" When i checked the calibration_errors.py file I saw that of all the imports from commons, get_board_type is the...

PolarBean

There was a similar issue to this before, and the naming convention for the cameras ended up being the issue. I have tried renmaing my cam_regex a few times, and...

kewe7879

I have two cameras for my project--in our lab, they're in the system as 10374 and 10376. When I named my videos before I got to 3D (just for the...

kewe7879