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                                            Kaylee Yuhas

issue #606 - catch index error for variants at alignment gap

Thanks Reece, that was super helpful! While I don't think this code change solves the core issue (which seems to be related to the _get_altered_sequence method), this at least solves...

issue #606 - catch index error for variants at alignment gap

Hi Reece, I have updated the pull request to (1) add unit tests, and (2) move the try/catch for Index Errors into the "_get_altered_sequence" method where the error occurs. _get_altered_sequence...