kyle
kyle
Thank you so much, simoncchu. I used full path in my commmand, and solved the above problem. however, i get new error: ================================ Blacklist file null does not exist! +++++++++++++++++++++...
$ python /home/liukai/biosoft/wes_script/xTea-master/xtea/x_TEA_main.py -D -i /home/liukai/postd/we s/data/HR_48sample_normal/5.TE_output/C180245-N/Alu/candidate_list_from_clip.txt --nd 5 --ref /home/liukai/db/human_genome_ind ex/hg38/hg38.fa -a /home/liukai/biosoft/wes_script/xTea-master/rep_lib_annotation/Alu/hg38/hg38_Alu.out -b /home/liukai/postd /wes/data/HR_48sample_normal/5.TE_output/C180245-N/Alu/bam_list.txt -p /home/liukai/postd/wes/data/HR_48sample_normal/5.TE_out put/C180245-N/Alu/tmp/ -o /home/liukai/postd/wes/data/HR_48sample_normal/5.TE_output/C180245-N/Alu/candidate_list_from_disc.tx t -n 8 Working on "disc" step! Ave...
> It's unclear to me which step triggered the error from what you posted here. Could you post the output files with size? . ├── [ 23] Alu │ ├──...
> Just noticed you have run that step. Not sure why trigger this error `ValueError: invalid coordinates: start (19177217) > stop (19177216)`. Is this WES? Could you test on HG002...
> any updates on this issue? It was an error during my data preprocessing that resulted in this issue. I had only utilized the 5'-end of the paired-end sequencing fastq...