Kamyar Yazdani

Direct nanopore RNA sequencing tombo resquiggle FASTA reference genome

3

So, I performed direct RNA sequencing on nanopore and got fast5 files for them. When I do tombo resquiggle, should me reference fasta file by DNA or RNA sequence in...

Jupyter Kernel Dying while using batch_add

1

Running the following commands seem to both kill my jupyter kernel and I can't figure out why. I appreciate the help: lf.batch_add(enc.batch_from_weight_array(fps, method="I2CWS")) lf.index() Thanks

Multimapped Reads

1

How does this package deal with multi-mapped reads?