kwonej0617

Request for xpore result of HEK293T-rep2

20

Hi, developer. Thank you for providing a useful tool! I have run xpore and generated the result with HEK293T-WT-rep2 and HEK293T-Mettl3-KO-rep2 successfully. I wanted to check whether I correctly generated...

Empty diffmod.table file, only header generated when running xpore diffmod with preprocessed files, not able to reproduce the data

7

Dear @ploy-np and @yuukiiwa, @jonathangoeke, I downloaded preprocessed data of HEK293T-WT/KO-rep1,2,3 from https://doi.org/10.5281/zenodo.4587661 and run xpore 2.1 with those files. However, I didn't get any sites in the output file,...

Endless running Tombo resuiggle, reached to 100% in resuiggle but doesn't finish the job

1

Hi, @marcus1487 In the tombo log file, it looks like the resquiggle process has been successfully done and reached 100%. However, it doesn't report resquiggle report and finish the job....

Endless running Tombo resuiggle, reached to 100% in resuiggle but doesn't go to next step, generate output files

1

Hello! @marcus1487 I have run Tombo successfully with my dataset earlier. However, I used the same data and run the same pipeline again (I might add some options in resquiggle...

SystemError: null argument to internal routine

7

Hi, Thank you for developing a useful tool. I have run Nanocompore with my data but I got the following error. ``` PLEASE NOTE: This is an experimental module to...