Karthik Nair

Hello, I've summarized what I've understood so far, please let me know if its correct - - padjust for aberrant splicing events should ideally be below 0.05 - deltapsi for...

It was a feature which we would have loved, but alas this isn't the case. We also relied on ```-ct``` to get percent of bases depending on their coverage (ex....

@Z-Zen woah, it indeed is equivalent. I had come across a [post ](https://gatk.broadinstitute.org/hc/en-us/community/posts/360075081752--DepthOfCoverage-ct-not-working-in-GATK-4-1-8-1) where it was mentioned ```-ct``` is not supported. While the reply did ask the OP to read...

Not the author, but you could try to use ```@RG``` instead of ```@rg``` in your alignment command. Also try to enter different different information for ```LB:``` field. Ex. ```LB:Library_1```

Just curious, what was the fastq.gz file size?

Hello, I'm facing the same issue, however with the test data set the command seems to be working fine. When I use my single, lone sample as input I get...

This is happening whenever I use Rstudio via Ubuntu. Closing the lid of my laptop for some time hides the window. The thing is, I have optimized my power setting...