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Published 20 hours ago • verified publisher icon kundajelab

migrated from pysam to pyfaidx

Open Avsecz opened this issue 6 years ago • 2 comments

  • closes https://github.com/kundajelab/genomelake/issues/18

  • replaced pysam with pyfaidx

  • removed pybedtools dependency

  • moved the main package imports into classes (pyBigWig, pyfaidx)

Avsecz avatar Oct 01 '18 22:10 Avsecz

Pull Request Test Coverage Report for Build 101

  • 14 of 14 (100.0%) changed or added relevant lines in 3 files are covered.
  • No unchanged relevant lines lost coverage.
  • Overall coverage increased (+0.3%) to 90.476%
Totals Coverage Status
Change from base Build 86: 0.3%
Covered Lines: 152
Relevant Lines: 168
💛 - Coveralls

coveralls avatar Oct 06 '18 13:10 coveralls

@jisraeli if you are happy with the PR, can you also make a release on bioconda?

Avsecz avatar Oct 06 '18 13:10 Avsecz