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Published 20 hours ago • verified publisher icon kundajelab

Java memory issue

Open ahorn720 opened this issue 6 years ago • 1 comments

I think that my directory should have enough memory, im not getting a quota error like previously. Because i thought it was a java memory issue, i even added export _JAVA_OPTIONS="-Xms256M -Xmx728M -XX:ParallelGCThreads=1" to my ~/.bashrc too. But im still getting this error. Previously it would stop at bowtie but now its stopping at the adapter cutting.

Any suggestions?

Thank you! NBM_15-4stderror.txt NBM_15-4stdout.txt

ahorn720 avatar Jun 25 '18 03:06 ahorn720

This is a disk space problem. Please check disk space on

  1. your working directory where you ran the pipeline command line.
  2. your pipeline git directory (/home/$USER usually have small space).
  3. temporary directories ($TMP and $TMPDIR).

leepc12 avatar Jun 25 '18 20:06 leepc12