Kristian Ullrich

Hi, I am running prokka in a conda environment. Does anyone knows how I could direclty install `Bio::SearchIO::hmmer3` from within the yml file? ``` name: prokka channels: - conda-forge -...

Yes, I am interested. Actually, I am re-implementing this (https://github.com/mrvollger/StainedGlass) but using sourmash jaccard distances instead of blast . By this, the tool is much faster and can be used...

Here, e.g. chr4 as a comparison, but with jaccard distances. I just need to work on the color map and to implement strand specific scores. Even multithreading might be possible...

Hi, if I do it I get the following, so 800MB for the gz and the unzipped file has 3006MB so in my case the full reference genome is present?...

One question, if there would be a stable bulk build on all bioconductor `release-XXX` packages. All `bioconductor-XXX` bioconda packages would be redundant and one should think about to remove this...

I am just on the way to include my R-Bioconductor package to bioconda, mainly to make it accessible to Galaxy afterwards. If there is a stable bulk bioconductor biconda release,...

Hi, it is `MSA2dist` the problem for the Bioconductor `release-3.16` so far is that the most used package/dependency `Biostrings`, so far is failing for `OSX`. With this issue using an...

see e.g. https://github.com/bioconda/bioconda-recipes/issues/37827 https://github.com/bioconda/bioconda-recipes/issues/37535 https://github.com/bioconda/bioconda-recipes/issues/37224

Here, more or less same problem. I am using the wtdbg2.pl script to assemble 3G mouse genome, and samtools sort detects two problems: 1. truncated read (missing "rl") tag on...

I will try to extract the lines and than the sequences, it is a rather large output file (60G)