Katharine S. Walter

Row with multiple lines

2

Hi, This is a question about **package functionality**. I was wondering if there are recommendations for how to extract tables in which rows span multiple lines as in the tabula...

Hi, I have used hap.py to measure performance and get a strange result in which at the highest value of my QQ field (QUAL = 228), a very low recall...

VCF to FASTA

8

Hi, I'm wondering if there is a best practice for converting a multi-sample VCF file to a multi-sample FASTA using bcftools. I'm interested in generating a FASTA of variant sites...

Drop tips for BEAST trees

1

Hi, Thank you for a fantastic resource. I was wondering if there's a way to drop tips from a BEAST tree after reading in with read.beast? Thank you in adavance,

NA12877 chrX calls

8

Hi, We are using the PlatinumGenomes NA12877 resource and are wondering why calls on chrX begin at position 2781986? The corresponding ConfidentRegions.bed.gz begins at: chrX 251053 251087. Thank you for...