Katherine Silliman

Add a 4th step that will decontaminate your data. Options to include: - [ ] [decontam](https://docs.qiime2.org/2024.10/plugins/available/quality-control/decontam-identify-batches/) as implemented in qiime2 - [ ] [SCRuB](https://shenhav-and-korem-labs.github.io/SCRuB/) - [ ] batch mode for...

This issue is only relevant if you want to merge paired end reads, such as before deblur. If using AVITI data you'll get an error: Activating conda environment: qiime2-amplicon-2024.10 vsearch...