Kent Shefchek
Kent Shefchek
It would be useful to link to a specific row (or result set) in a table, for example, in a similar way github allows one to select a line in...
Koza should be able to take a yaml or json file as a map and just make it available as a dictionary without any special configuration.
Currently zenodo is auto adding contributors based on the github contributors list, but I think we should credit a larger number of people who have helped develop this. We should...
This library is very useful for generating heatmap/dendrogram plots; however, I found myself manually editing your code to change the linkage method. Would it be possible to pass in a...
In this notebook: https://github.com/NCATS-Tangerine/cq-notebooks/blob/master/Orange_QB2_Other_CQs/Drug_Repurpose_By_Pheno/drug_repurposing.ipynb I input the phenotypes for Amyotrophic lateral sclerosis type 1, expecting other subtypes would show high similarity; however, many related diseases are receiving somewhat low scores....
Prefix filters were implemented with https://github.com/monarch-initiative/owlsim-v3/pull/76 but haven't made it to the service layer.
When presenting results I'm often asked for a p value to determine if a match is significant. @drseb has proposed a way to generate p values for similarity scores here:...
In owlsim2 there is an ability to filter on namespace. In Monarch we use this as a workaround to generate species specific queries. However, it may be useful to add...