Karissa Hughes

Build and classification parameters suggestions based on data type (aDNA)

3

Hi again, another thing that I would absolutely love your input on is build and classification parameters based on the type of data I work with, which is ancient DNA,...

Clarification questions for kmer/minimizer function

1

I have a few clarifying questions about the kmer/minimizer stuff because it keeps tripping me up. Correct me if I am wrong, but how I picture the kmer/window size thing...

Missing species in inspect file after database build

1

Hi Kraken2 developers/community, I recently built a large Kraken2 database with genomes from the NCBI RefSeq database. I added genomes regardless of assembly level and limited it to 1 assembly...