krigia

Error in norm_cords$x - min(norm_cords$x) : non-numeric argument to binary operator

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@YingMa0107 @YMalab I would greatly appreciate your help with this error: > # Run CARD deconvolution > CARD_obj = CARD_deconvolution(CARD_object = CARD_obj) ## create reference matrix from scRNASeq... ## Select...

@YingMa0107 @YMalab I am getting the following error **_QC on scRNASeq dataset! ... ## QC on spatially-resolved dataset! ... Error: There are no common gene names in spatial count data...

sc and spatial count Matrix are correctly formatted but createCARDObject function returns error

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@YingMa0107 @YMalab I have exported tha RNA counts for both scRNA-seq and spatial data as dgCMatrix. **str(scRNA_seq_counts) Formal class 'dgCMatrix' [package "Matrix"] with 6 slots ..@ i : int [1:37279034]...

Error Error in norm_cords$x - min(norm_cords$x) : non-numeric argument to binary operator

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Hello @YingMa0107 @YMalab > # Make CARD object > CARD_obj = createCARDObject( + sc_count = sc_count, + sc_meta = sc_meta, + spatial_count = spatial_count, + spatial_location = spatial_location, + ct.varname...

@jbergenstrahle @ludvigla @davidecrs Hello STUtility team, I try to install STUtility package in R studio/ R 4.3.2 and I am getting the following > devtools::install_github( + "jbergenstrahle/STUtility", dependencies = TRUE...

Enrichment plot function in STUtility

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Hello @jbergenstrahle @ludvigla @davidecrs Does STutility have any option/function to generate enrichment spatial plots and UMAPs for Visium data? Similar to those generated by another pipeline for spatial analysis: Thank...