krejciadam

RunVelocity() uses "data" rather than "counts" matrix

2

Hi! I've been playing with this Seurat wrapper for a while and I found something that confuses me a little. `velocyto.R::gene.relative.velocity.estimates()` expects the input matrices to be raw count matrices...

space in fastq header

1

Hi! First of all, thank you for this useful tool. I have a little remark: When demultiplexing from separate R1, R2, I1, I2 files, the resulting demultiplexed fastq files get...

What exactly does "continual pretrained" mean?

1

Hi! I noticed the new models and zero-shot tutorials. The results look interesting. One thing I can't figure out is what exactly do you mean by "continual pretrained" checkpoint. The...

Perturbation: keeping within-batch cell pairing

2

Hi! I was wondering about fine-tuning the model for perturbation prediction on larger datasets containing multiple batches. Different batches can be e.g. different cell lines. Each perturbation can exist in...

Hi! In very rare cases, I get this error: ``` munmap_chunk(): invalid pointer Aborted (core dumped) ``` Unfortunately, I can't share the fastq where this happens yet, because it is...