complex-upset

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Clear memory from complexUpset plotting without having to restart Rsession

2

**Objective** Is there a way to clear the objects stored in R memory after running complexUpset? Currently creating an upSet plot with additional attribute plotting that fills up most of...

callumparr

Add `orientation` argument to allow flipping axes

1

Closes #135

krassowski

Double/dodged bars

9

Great package! I'm wondering if there is an easy way to have two side-by-side bars for each intersection? I have my observed data that I want to mainly plot, but...

outlace

General performance in big(ish) data

6

**Is your feature request related to a problem? Please describe.** Using upsetR i could get plots from big(ish) data with ~5 million x 600 sized tables. complex upset yields no...

16mc1r

flip axes

4

**Is your feature request related to a problem? Please describe.** I was wondering whether it would be possible to flip the axes of the upset plot so that the intersection...

januz

Replace `base_annotations` with `intersection_size`

1

`base_annotations` is redundant to `annotations`. Very often users want to customize the intersection size bar plot and they should be able to just pass `upset(..., intersection_size=intersection_size()` rather than specify lengthy...

krassowski

How to save the plot with `ggsave`?

1

When I try to add a title above with wrap = T, the ggsave fails ( upset( movies, genres, name='genre', width_ratio=0.1, min_size=10, stripes=c(alpha('grey90', 0.45), alpha('white', 0.3)),wrap = T ) &...

SdelciLab

Need to raise a warning when user passes missing values, as this can lead to unexpected results.

krassowski

Large counts numbers do not fit the bars

3

Hello, it's me again I noticed sometimes the numbers displayed in the bars are not correct  The bar for the first intersection set is obviously not 39123 but more...

ghost

Expected overlaps

1

Add tests for enrichment of overlaps: - `ComplexUpset:::test_set_overlaps` (not currently exported, but will become public in the future) - `ComplexUpset:::test_set_overlaps_of_degree` (internal)

krassowski