Dan Kool

Problem with broadcasting .== in MNIST Conv model from the zoo

6

I'm getting a GPU compilation error with the conv model from the zoo: ```KernelError: passing and using non-bitstype argument Argument 4 to your kernel function is of type [something long...

R" [code] " works fine, but R""" code blocks do not. For example: R""" modes

Here is the code first: `sfile = downloadsifts("2VB1")` I am getting this error: `ERROR: ArgumentError: missing or unsupported scheme in URL (expected http(s) or ws(s)): ftp://ftp.ebi.ac.uk/pub/databases/msd/sifts/split_xml/vb/2vb1.xml.gz` This happens with basically...

Alignment of 2 LongAminoAcidSeq with AffineGapScoreModel from docs goes out of bounds

1

Affine alignment is not working, but simple edit distance works. ``` strucseq = "KVFGRCELAAAMKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQINSRWWCNDGRTPGSRNLCNIPCSALLSSDITASVNCAKKIVSDGNGMNAWVAWRNRCKGTDVQAWIRGCRL" msaseq = "KIFERCEFARTLKRNGMGGYHGIRLADWVCLARWESSYNTKATNYNSKSTDYGIFQINSRYWCNDGKTPGAVNACGISCNVLLQDDITQAIACAKRVVDPQGIRAWVAWKKHCEQDLTQYQGC" ``` ## Expected Behavior Something like ``` costmodel = CostModel(match=0, mismatch=1, insertion=1, deletion=1)...

Updated compat versions and Fast tweak for tests to all work

5

Updated versions and changed the `TensorCast` import in the `Fast` module so that the tests all work. I don't know if correct to do that. `TransmuteDims` is set to the...

Error using Libz on Windows, no zlib1 found

3

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