kmshort

Matrix.utils is off of CRAN again, and not on Bioconductor 3.15. You have to install from archive. Alternative for Matrix.utils should be considered. It was booted from CRAN because v0.98...

DoubletDecon - Main_Doublet_Decon - no locations are finite error.

4

Hi, I'm testing out DoubletDecon 1.1.4 with data which has been processed using Seurat's standard method, and then using the example provided here on the DoubletDecon git. However the results=Main_Double_Decon...

Request: DoubletDecon Shiny - change to platform-neutral shinyFiles directory selector

1

There are currently issues with shinyDirectoryInput which relies on clunky PowerShell Scripts and Batch Files to launch a native Windows-specific directory selection dialog. This is causing DoubletDecon's "Select input file...

Introduce split.by?

1

Hi, Thanks for this very handy tool for cluster exploration. It would be most useful if a "split.by" function could be added to Nebulosa, with behaviour similar to Seurat's split.by...

Cellprofiler 4.0.7 and CellPose 3.0.7 - RunCellpose is out of date

1

Firstly, my versioning information: ``` CellProfiler version: 4.2.7 cellpose version: 3.0.7 platform: win32 python version: 3.8.19 torch version: 2.4.0 conda version: 24.7.1 ``` I am using the Cuda SDK v12.4,...