Ka Ming Nip
Ka Ming Nip
I think your simulation is stuck in an infinite loop here: https://github.com/bcgsc/NanoSim/blob/master/src/simulator.py#L1237 It is trying to simulate certain read lengths, but it cannot find the "suitable" combination of lengths for...
@HLHsieh , please checkout the changes in my branch: https://github.com/bcgsc/NanoSim/tree/kmnip_patch1 It may potentially handle the infinite loop. This is not an ideal solution, but the user is informed of the...
Yes, it does!
Hello Simon, If both short reads and long reads are used, the short reads only contribute to the de Bruijn graph and the k-mer multiplicities in the error correction step...