Kevin Mitcham

Results 10 comments of Kevin Mitcham

ome-zarr-py requires requires-python = ">3.10" as of 0.10.3. (discovered while looking into this issue)

Looks like the future makes the problem go away, if only we could reach the future: `====================================================================================================== 219 passed, 75 xfailed, 14119 warnings in 152.60s (0:02:32) ======================================================================================================= (venv-3.13.0) kevin.mitcham@ip-10-141-0-41:~/projects/bioio$ pip...

Going to put this on the backburned until https://github.com/bioio-devs/bioio/pull/80 gets merged in

I think the release that unblocks https://github.com/bioio-devs/bioio/pull/80 has been merged, so 80 might move soon.

> I think the tests would be testing the writing since we have other tests in the readers to guarantee the writing aspect so it should belong in bioio I...

I'm thinking we want a new integration test repo; it would be a good place to house the tests that confirm the latest versions of bioio work with all the...

I have a script that reads a test file, writes it out, and reads it again for: ome_zarr ome_zarr 2 ome_tiff time_series (gif, mp4) 2d (png) It mostly uses the...

Dan (and others) have decided the writers should be moved into the readers, so this automation is blocked by that.

This task is replaced with three tasks specific to the repos that have writers: bioio-ome-zarr, bioio-imageio, bioio-ome-tiff

You will get dramatically better performance specifying the reader (eg, `io_image = BioImage(path, reader=reader)` vs `io_image = BioImage(path)`. If you know what modules you have installed and file types you...