Koshlan Mayer-Blackwell

This issue concerns unexpected output when running parasail.nw_stat() and calling the alignment .length attribute. Consider the following alignment: > -- GG - - - - > AAGGAAAA One might expect...

Add informative Error Message when sparse matrix is passed to trcrdist.public._neighbors_fixed_radius supply as csrmat to **trcrdist.public._neighbors_fixed_radius** does not give an appropriate error message, and consumes a lot of memory. Add...

Installing with python 3.9.10, Avoid Numpy/Numba/Fisher package conflicts

1

tcrdist3 uses Numba for speed which currently requires numpy < 1.22 (see https://numba.readthedocs.io/en/stable/user/installing.html), but lower version of numpy will not work in Python 3.10, so be sure you don't use...

import_adaptive_file(f) defaults to human and beta but user won't know that. 1. Add warning 2. And update docs

Setup fails when trying to install parasail-1.2.3 on OSX: Possible solution until requirements are changed ``` pip install parasail==1.2 ```

Beta-users have found that jedi==0.18.0 has caused crashes and prevents autocomplete in IPython Solution until we change requirements officialy: ``` pip uninstall jedi pip install jedi==0.17.2 ```