Konrad Rudolph

Feature: user hooks

4

This is a WIP PR to implement #200. It * adds a function `add_hook` with semantics roughly as discussed * invokes the user hooks in `setup_context` * adds a unit...

Could callr support user hooks?

11

My specific use-case is klmr/box#199. The package ‘box’ needs to figure out which script file it is called from. It uses the script filename on the R command line for...

This is the mono font of the [WenQuanYi project](https://en.wikipedia.org/wiki/WenQuanYi). It is a narrow font that allows fitting many columns on the screen while preserving excellent readability. The font is licensed...

Allow setting .lmod.d location or use XDG convention by default

5

lmod currently creates a hidden directory (`.lmod.d`) in the user’s home directory that is used for various purposes, notably for the list of default modules and the spider cache. Am...

Use XDG config directory

4

It would be great if the default lintr config would be preferentially looked up in the appropriate [XDG base configuration directory](https://specifications.freedesktop.org/basedir-spec/basedir-spec-latest.html) instead of the user home directory. That is, if...

Option to not generate an HTML/Markdown output

3

In my opinion, ezknitr does a bit too much: At the moment, ezknitr always generates HTML output via `markdown::markdownToHTML`. I’d argue that this shouldn’t happen by default (it’s fundamentally a...

Explore infrastructure requirements to allow nesting modules inside packages

1

### Please describe your feature request ## Can the following ever work? ```r box::use(foo/bar) ``` Loads a module `bar` that’s defined inside the package `foo`. ## Open questions What happens...

Currently when passing string data to ‘vroom’ (i.e. via `vroom::vroom(I(mydata), ...)`) it writes that memory out to disk into a temporary file before reading the data back in. Unfortunately this...

[:link: `lesspipe.sh`](https://www-zeuthen.desy.de/~friebel/unix/lesspipe.html) is a popular configuration for `LESSOPEN` that dispatches to different filters depending on file types. As far as I understand, it should be able to integrate `dnacol` with...

First line in FASTQ file coloured different from rest

1

In the following screenshot, produced by `gunzip -c file.fastq.gz | dnacol`, the first ID line contains highlighted fragments (the `N` just before the end, as well as the barcode). The...