Krishna Kumar

Add support to `glossaries` package

1

Support for `glossaries` package [http://www.latex-community.org/know-how/latex/55-latex-general/263-glossaries-nomenclature-lists-of-symbols-and-acronyms](http://www.latex-community.org/know-how/latex/55-latex-general/263-glossaries-nomenclature-lists-of-symbols-and-acronyms)

PDF/A Support for thesis

4

For long term preservation. Good format for archives of thesis/dissertations. Try PDF/A-3 with embedded font support? http://support.river-valley.com/wiki/index.php?title=Generating_PDF/A_compliant_PDFs_from_pdftex

Pandoc: Convert LaTeX thesis to HTML

2

Convert LaTeX thesis to HTML - incorportate mathjax support - CSS styling - Possible github integration for hosting

Add TACC Galaxy to CMake

1

For in-situ visualization it would be great to have TACC Galaxy as a compilation dependency. https://github.com/tacc/galaxy

Runtime in VTK file outputs

2

**Describe the feature** Add simulation runtime to VTP files so we can render the simulations as per the simulation time.

Fails to compile with the latest Eigen version on Stampede2

2

**Describe the bug** Eigen v3.4.0 causes multiple definition errors and fails to compile the MPM code. **To Reproduce** Steps to reproduce the behavior on Stampede2: 1. Compile with the following...

Please use https://github.com/geoelements/gns/blob/main/gns/render_rollout.py as an example of generating a VTK files for paraview rendering.

Create a MPM example for a plate with a hole. - For #10: Try the C++ MPM code https://github.com/cb-geo/mpm to run the 2D example of a plate with a hole...

Using https://github.com/cb-geo/mpm/blob/develop/include/materials/bingham.tcc as the reference implementation for the Bingham fluid model, add it to our https://github.com/geoelements/diff-mpm/blob/main/diffmpm/material.py