BIGSdb
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kjolley
Bacterial Isolate Genome Sequence Database (BIGSdb): A platform for gene-by-gene bacterial population annotation and analysis.
This is to allow some variants to only be detected for alleles within a specific length range. Allow multiple definitions to report at the same mutation position.
Currently this only uses BLAST and will return the closest match, but the isolate database allows filtering by in silico PCR and hybridization. This could be useful for schemes where...
This is necessary for identifying scheme profiles where the scheme allows missing loci and a genome assembly is queried.
Analysis results are stored in the analysis_results table in JSON format. BIGSdb can display the output of any analysis stored here using template files in the isolate information page, without...
Need to ensure names are unique within the dataset, not too long, or include special characters.