kirasato0211

Hi, Below is a tree view of output folder. ``` . |-- ASGAL | |-- ENSG00000105976.events.csv | |-- ENSG00000105976.mem | |-- ENSG00000105976.sam | |-- ENSG00000146648.events.csv | |-- ENSG00000146648.mem | `--...

I can see the .fa files in the samples directory are non-empty but one of the file in the annos directory is empty and other one is non-empty. Please find...

Thank you for pointing it out. It helped me to run ASGAL successfully. However, there is no event reported in the output. I am expecting MET exon 14 skipping event...

could you please let me know how you found 2 events using salmon.bam file? SAM files are not empty. I tried removing .gtf.db files in the annos folder and also...

I run ASGAL with the edited annotation file you have sent to me and it didnt work. Then i used the salmon.bam file to generate the samples as you mentioned...

Thank You. These files worked for me. The genome file i was using earlier has chr7 in the header. However it has repeat masked bases and 50 bases per line....

could you please let me know from where i can get the latest asgal release (version 1.1.2)?

Thank you. I am able to run ASGAL using this image. However, came across below error. subprocess.CalledProcessError: Command '['/galig/bin/SpliceAwareAligner', '-g', '/data/output/refs/chr7.fa', '-a', '/data/output/annos/ENSG00000105976.gtf', '-s', '/data/output/samples/ENSG00000105976.fa', '-l', '15', '- e', '3',...

could you please let me know why i am getting below error while running ASGAL tool in docker? subprocess.CalledProcessError: Command '['/galig/bin/SpliceAwareAligner', '-g', '/data/output/refs/chr7.fa', '-a', '/data/output/annos/ENSG00000105976.gtf', '-s', '/data/output/samples/ENSG00000105976.fa', '-l', '15', '-...

No. I am using own dataset.