Kimberly Negrette

Hi! I have the same problem. I want to train augustus using a .gbff file I downloaded from ncbi https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/000/611/645/GCF_000611645.1_mono_v1/GCF_000611645.1_mono_v1_genomic.gbff.gz But randomSplit.pl fails with "size 100 is greater than the...

Hi! did you manage to solve this? I am having the exact same output from circlator progchekc --debug. I have nucmer 3.1 but the version not being recognized. Any help...

Thank you! That totally solved the nucmer problem! But now I got some error with canu and java, did you happen to have something like this? ERROR: mhap overlapper requires...

Hi! did you solve this issue? I'm having the exact same problem now. Any help is really appreciated. Thanks!

Hi @MattPinder! Thak you for taking the time to reply! In case you need to run circlator again, I think I managed to solve this nucmer problem. I downloaded the...

Hi @aubombarely! Are there any updates on this issue? is the pipeline still using WGS or you may give any suggestions on using Canu within Organelle_PBA? Thanks!